Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette domain-containing protein | H9N25_03755 | A5U7B7 | Negative | 894925 - 895608 | 25410.8 |
| fructose-6-phosphate aldolase | H9N25_03760 | Not Available | Negative | 895610 - 895813 | 7835.76 |
| gliding motility-associated c-terminal domain-containing protein | H9N25_03765 | Not Available | Negative | 895865 - 897811 | 69889.7 |
| acyl-coa reductase | H9N25_03770 | Not Available | Negative | 897890 - 898906 | 38099.1 |
| 4fe-4s dicluster domain-containing protein | H9N25_03775 | P00208 | Positive | 898985 - 899335 | 12770.6 |
| adenylate kinase | H9N25_03780 | P45900 | Negative | 899339 - 899929 | 22838.3 |
| universal stress protein | H9N25_03785 | Q57951 | Negative | 899953 - 900402 | 16236.5 |
| c40 family peptidase | H9N25_03790 | O35010 | Positive | 900513 - 901298 | 29558.0 |
| wd40 repeat domain-containing protein | H9N25_03795 | O94527 | Negative | 901434 - 902333 | 33925.3 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | H9N25_03800 | P06989 | Negative | 902412 - 903014 | 22632.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

