Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein iscx | H9N25_03705 | Q51384 | Positive | 886906 - 887148 | 9780.25 |
| had hydrolase family protein | H9N25_03710 | P0ABZ5 | Positive | 887220 - 887747 | 19121.2 |
| universal stress protein | H9N25_03715 | Not Available | Positive | 888134 - 888964 | 31065.9 |
| hypothetical protein | H9N25_03720 | Not Available | Positive | 889068 - 889457 | 14698.0 |
| septum formation protein maf | H9N25_03725 | Q8A749 | Positive | 889527 - 890093 | 21086.3 |
| hypothetical protein | H9N25_03730 | Not Available | Positive | 890142 - 890822 | 25370.1 |
| exopolyphosphatase | H9N25_03735 | P44828 | Negative | 890878 - 891792 | 33832.0 |
| duf72 domain-containing protein | H9N25_03740 | O32135 | Negative | 892032 - 892748 | 28299.7 |
| molecular chaperone dnaj | H9N25_03745 | Q64VI7 | Negative | 892968 - 894125 | 41370.2 |
| nucleotide exchange factor grpe | H9N25_03750 | Q8A8C4 | Negative | 894215 - 894796 | 21609.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

