Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_03655 | Q7VCA3 | Positive | 874867 - 875508 | 24494.4 |
| ccmd family protein | H9N25_03660 | Not Available | Positive | 875618 - 875836 | 8242.53 |
| glu/leu/phe/val dehydrogenase | H9N25_03665 | Q54KB7 | Positive | 876489 - 877910 | 51922.3 |
| hypothetical protein | H9N25_03670 | Not Available | Negative | 878252 - 879601 | 51273.5 |
| hypothetical protein | H9N25_03675 | Not Available | Negative | 879651 - 881672 | 75838.8 |
| hypothetical protein | H9N25_03680 | Not Available | Negative | 881820 - 882500 | 25045.3 |
| cytochrome c maturation protein ccme | H9N25_03685 | Not Available | Positive | 882757 - 883191 | 16354.7 |
| doxx family membrane protein | H9N25_03690 | Not Available | Positive | 883197 - 885661 | 89564.8 |
| duf2520 domain-containing protein | H9N25_03695 | Not Available | Positive | 885666 - 886430 | 27612.4 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | H9N25_03700 | P44428 | Positive | 886471 - 886803 | 12102.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

