Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3810 domain-containing protein | H9N25_03605 | Not Available | Negative | 866974 - 868050 | 41592.0 |
| hypothetical protein | H9N25_03610 | Not Available | Negative | 868056 - 868430 | 14646.9 |
| dihydroorotase | H9N25_03615 | Q2NHZ6 | Negative | 868477 - 869811 | 49187.8 |
| doxx family membrane protein | H9N25_03620 | P25888 | Positive | 870105 - 871450 | 49181.9 |
| hypothetical protein | H9N25_03625 | Not Available | Positive | 871450 - 871722 | 10160.3 |
| gliding motility protein gldc | H9N25_03630 | Not Available | Positive | 871840 - 872175 | 12825.2 |
| hypothetical protein | H9N25_03635 | Not Available | Positive | 872381 - 872782 | 15244.5 |
| hypothetical protein | H9N25_03640 | Not Available | Negative | 873039 - 873437 | 15026.6 |
| methylated-dna--[protein]-cysteine s-methyltransferase | H9N25_03645 | Q8TI34 | Negative | 873458 - 873937 | 17664.1 |
| heme exporter protein ccmb | H9N25_03650 | Not Available | Positive | 874058 - 874723 | 24670.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

