Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s1/p1 nuclease | H9N25_03555 | Not Available | Negative | 855071 - 856027 | 36677.0 |
| voc family protein | H9N25_03560 | Not Available | Negative | 856081 - 856506 | 16005.3 |
| duf1569 domain-containing protein | H9N25_03565 | Not Available | Negative | 856622 - 857074 | 17558.2 |
| hypothetical protein | H9N25_03570 | Not Available | Negative | 857165 - 857803 | 23992.6 |
| duf4395 domain-containing protein | H9N25_03575 | Not Available | Positive | 858065 - 858508 | 16409.7 |
| llm class flavin-dependent oxidoreductase | H9N25_03580 | Q53218 | Negative | 858510 - 859541 | 38103.9 |
| fe-s protein assembly chaperone hsca | H9N25_03585 | Q98DD1 | Negative | 859974 - 861830 | 67752.9 |
| tonb-dependent receptor | H9N25_03590 | P17315 | Positive | 862142 - 864877 | 99136.7 |
| glycosyltransferase | H9N25_03595 | Not Available | Negative | 864962 - 866197 | 47224.9 |
| pp_00704 | H9N25_03600 | Not Available | Positive | 866351 - 866932 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

