Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2'-5' rna ligase family protein | H9N25_03455 | Not Available | Negative | 835887 - 836567 | 26350.3 |
| glycine--trna ligase | H9N25_03460 | Q8KAB1 | Negative | 836661 - 838304 | 63491.2 |
| hypothetical protein | H9N25_03465 | Not Available | Negative | 838709 - 838912 | 7345.01 |
| s8 family serine peptidase | H9N25_03470 | P00780 | Negative | 838909 - 840315 | 49665.0 |
| hypothetical protein | H9N25_03475 | Not Available | Positive | 840581 - 841222 | 24350.2 |
| hypothetical protein | H9N25_03480 | Not Available | Positive | 841235 - 841882 | 26290.6 |
| two-component sensor histidine kinase | H9N25_03485 | Q5HN49 | Positive | 841861 - 842646 | 30018.6 |
| response regulator transcription factor | H9N25_03490 | P32967 | Positive | 842643 - 843275 | 23796.1 |
| glycerophosphodiester phosphodiesterase family protein | H9N25_03495 | O07592 | Positive | 843382 - 844302 | 34465.5 |
| atp-binding cassette domain-containing protein | H9N25_03500 | P42332 | Positive | 844390 - 845097 | 26035.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

