Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c40 family peptidase | H9N25_03405 | P96645 | Negative | 826222 - 826767 | 19919.1 |
| hypothetical protein | H9N25_03410 | Not Available | Negative | 826883 - 827245 | 13201.5 |
| sdr family oxidoreductase | H9N25_03415 | Q4A054 | Negative | 827294 - 827995 | 25111.7 |
| aromatic amino acid hydroxylase | H9N25_03420 | P30967 | Negative | 828321 - 830102 | 66520.5 |
| gtra family protein | H9N25_03425 | Not Available | Negative | 830755 - 831204 | 17376.7 |
| cap domain-containing protein | H9N25_03430 | Not Available | Negative | 831394 - 832083 | 26781.8 |
| c40 family peptidase | H9N25_03435 | Q736M3 | Positive | 832220 - 833428 | 44170.2 |
| sdr family oxidoreductase | H9N25_03440 | Q49117 | Negative | 833578 - 834342 | 26974.3 |
| helix-turn-helix transcriptional regulator | H9N25_03445 | O34901 | Negative | 834429 - 834836 | 15729.9 |
| hypothetical protein | H9N25_03450 | Not Available | Negative | 834977 - 835861 | 31201.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

