Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin domain-containing protein | H9N25_03355 | A1SHU2 | Positive | 816499 - 817017 | 19384.4 |
| hypothetical protein | H9N25_03360 | Not Available | Negative | 817085 - 817537 | 17172.2 |
| ubiquinone-dependent pyruvate dehydrogenase | H9N25_03365 | P07003 | Positive | 817953 - 819689 | 63187.7 |
| hypothetical protein | H9N25_03370 | Not Available | Negative | 819754 - 820224 | 17419.9 |
| 4-hydroxyphenylpyruvate dioxygenase | H9N25_03375 | Q53586 | Negative | 820357 - 821487 | 42639.4 |
| doxx family membrane protein | H9N25_03380 | Q97Y16 | Negative | 821600 - 822764 | 42124.1 |
| hypothetical protein | H9N25_03385 | Not Available | Positive | 823045 - 823500 | 16206.2 |
| fumarylacetoacetate hydrolase family protein | H9N25_03390 | Q96GK7 | Positive | 823568 - 824566 | 36982.4 |
| flavin reductase family protein | H9N25_03395 | O67071 | Positive | 824637 - 825590 | 35390.6 |
| ydei/ompd-associated family protein | H9N25_03400 | P96666 | Positive | 825616 - 826221 | 23459.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

