Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| group iii truncated hemoglobin | H9N25_03305 | Q0PB48 | Negative | 805446 - 805841 | 15284.6 |
| hypothetical protein | H9N25_03310 | Not Available | Negative | 805822 - 806265 | 16348.0 |
| aspartyl protease family protein | H9N25_03315 | Not Available | Negative | 806330 - 806755 | 15907.4 |
| malate dehydrogenase | H9N25_03320 | Q8A0W0 | Negative | 807002 - 807940 | 33059.3 |
| hypothetical protein | H9N25_03325 | Not Available | Positive | 808088 - 808243 | 5715.04 |
| doxx family membrane protein | H9N25_03330 | O51526 | Positive | 808554 - 812986 | 162873.0 |
| thioredoxin | H9N25_03335 | P0A4L1 | Positive | 813163 - 813483 | 11662.2 |
| pqq-dependent sugar dehydrogenase | H9N25_03340 | P75804 | Positive | 813611 - 814828 | 43950.6 |
| duf58 domain-containing protein | H9N25_03345 | P9WLX4 | Positive | 815049 - 815966 | 35431.2 |
| redoxin domain-containing protein | H9N25_03350 | Q6DV14 | Positive | 816034 - 816495 | 17243.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

