Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| omph family outer membrane protein | H9N25_03255 | Not Available | Negative | 795609 - 796208 | 22343.2 |
| doxx family membrane protein | H9N25_03260 | P05652 | Positive | 796927 - 798884 | 71784.4 |
| helix-turn-helix transcriptional regulator | H9N25_03265 | C0H3S6 | Positive | 799041 - 799379 | 12728.6 |
| hypothetical protein | H9N25_03270 | Not Available | Positive | 799379 - 799624 | 9725.29 |
| hypothetical protein | H9N25_03275 | Not Available | Positive | 800043 - 800723 | 26040.3 |
| hypothetical protein | H9N25_03280 | Q8YSU5 | Negative | 800944 - 801870 | 35574.7 |
| hypothetical protein | H9N25_03285 | Not Available | Negative | 801895 - 802392 | 19120.8 |
| hamp domain-containing histidine kinase | H9N25_03290 | Q4L6C5 | Negative | 802553 - 803905 | 51462.2 |
| response regulator transcription factor | H9N25_03295 | P0AD00 | Negative | 803906 - 804583 | 25340.1 |
| srpbcc family protein | H9N25_03300 | Not Available | Negative | 804846 - 805382 | 20097.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

