Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hd domain-containing protein | H9N25_03205 | Q65Q41 | Negative | 785867 - 787321 | 55142.4 |
| threonylcarbamoyl-amp synthase | H9N25_03210 | Q3IDH7 | Negative | 787413 - 787979 | 20884.1 |
| duf4136 domain-containing protein | H9N25_03215 | Not Available | Positive | 788188 - 788559 | 13423.3 |
| glycosyltransferase family 4 protein | H9N25_03220 | P26402 | Negative | 788991 - 790100 | 42205.2 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | H9N25_03225 | Q6F9A5 | Negative | 790198 - 791016 | 29574.1 |
| rna-binding s4 domain-containing protein | H9N25_03230 | Q44264 | Positive | 791200 - 791601 | 15119.2 |
| ecsc family protein | H9N25_03235 | P55341 | Negative | 791602 - 792375 | 29563.1 |
| redoxin domain-containing protein | H9N25_03240 | O31820 | Positive | 792485 - 794410 | 71347.3 |
| nucleoside deaminase | H9N25_03245 | O34598 | Negative | 794467 - 794949 | 17910.5 |
| hypothetical protein | H9N25_03250 | Not Available | Negative | 794992 - 795498 | 19457.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

