Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l7/l12 | H9N25_03155 | Q8A468 | Positive | 769409 - 769786 | 12820.5 |
| dna-directed rna polymerase subunit beta | H9N25_03160 | A6GYU0 | Positive | 769944 - 773747 | 142235.0 |
| dna-directed rna polymerase subunit beta' | H9N25_03165 | Q11QA6 | Positive | 773836 - 778122 | 159488.0 |
| hypothetical protein | H9N25_03170 | Not Available | Negative | 778171 - 779082 | 36024.7 |
| sulfatase | H9N25_03175 | Q89YS5 | Positive | 779217 - 780821 | 61611.6 |
| duf3467 domain-containing protein | H9N25_03180 | Not Available | Positive | 781166 - 781477 | 11503.8 |
| doxx family membrane protein | H9N25_03185 | Not Available | Positive | 781554 - 782776 | 44353.4 |
| g-d-s-l family lipolytic protein | H9N25_03190 | Not Available | Positive | 782788 - 784080 | 45700.3 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | H9N25_03195 | A0LZ43 | Negative | 784132 - 785046 | 34458.4 |
| hypothetical protein | H9N25_03200 | Not Available | Negative | 785120 - 785767 | 24991.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

