Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_03055 | Not Available | Negative | 754856 - 756010 | 45245.9 |
| lysophospholipid acyltransferase family protein | H9N25_03060 | Not Available | Negative | 756390 - 758141 | 66586.5 |
| helix-hairpin-helix domain-containing protein | H9N25_03065 | Q6TEQ0 | Positive | 758237 - 759136 | 34414.8 |
| acyl-coa dehydrogenase | H9N25_03070 | P45867 | Positive | 759976 - 761130 | 41857.2 |
| hypothetical protein | H9N25_03075 | Not Available | Positive | 761401 - 761574 | 6133.59 |
| hypothetical protein | H9N25_03080 | Not Available | Negative | 761650 - 762036 | 14630.9 |
| 30s ribosomal protein s21 | H9N25_03085 | A6LE91 | Positive | 762205 - 762399 | 7539.24 |
| tyrosine-type recombinase/integrase | H9N25_03090 | B4SDZ2 | Positive | 762557 - 763438 | 33704.9 |
| ribosome-associated translation inhibitor raia | H9N25_03095 | P17161 | Positive | 763453 - 763800 | 13015.6 |
| Trna-thr | Not Available | Not Available | Positive | 764463 - 764535 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

