Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | H9N25_02955 | P46105 | Positive | 734892 - 736289 | 50897.4 |
| phosphoribosylglycinamide formyltransferase | H9N25_02960 | P52422 | Negative | 736711 - 737289 | 22064.6 |
| 30s ribosomal protein s20 | H9N25_02965 | Q11TZ6 | Positive | 737531 - 737785 | 9660.03 |
| dna repair protein radc | H9N25_02970 | A5FMW5 | Positive | 737954 - 738652 | 26133.3 |
| endonuclease/exonuclease/phosphatase family protein | H9N25_02975 | Q5UQW5 | Positive | 738761 - 739597 | 31596.9 |
| doxx family membrane protein | H9N25_02980 | Not Available | Positive | 739601 - 740361 | 27648.4 |
| radical sam protein | H9N25_02985 | Q58036 | Positive | 740367 - 741761 | 53344.3 |
| hypothetical protein | H9N25_02990 | Not Available | Positive | 741763 - 741957 | 6826.06 |
| hypothetical protein | H9N25_02995 | Not Available | Positive | 741973 - 742167 | 6855.04 |
| phenylalanine--trna ligase subunit beta | H9N25_03000 | Q64T65 | Positive | 742302 - 744701 | 88281.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

