Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | H9N25_02905 | Not Available | Negative | 723698 - 724303 | 23635.6 |
| thymidine kinase | H9N25_02910 | A6L1E7 | Negative | 724350 - 724931 | 21271.6 |
| hypothetical protein | H9N25_02915 | Not Available | Positive | 725055 - 726245 | 44874.4 |
| rod shape-determining protein roda | H9N25_02920 | O83514 | Negative | 726798 - 728060 | 46757.5 |
| penicillin-binding protein 2 | H9N25_02925 | P0AD67 | Negative | 728063 - 730072 | 74957.7 |
| rod shape-determining protein mred | H9N25_02930 | Not Available | Negative | 730072 - 730587 | 19825.0 |
| rod shape-determining protein mrec | H9N25_02935 | Q8Y6Y4 | Negative | 730580 - 731419 | 30881.5 |
| rod shape-determining protein | H9N25_02940 | Q01465 | Negative | 731505 - 732527 | 36735.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | H9N25_02945 | Q8A155 | Negative | 732726 - 734252 | 55373.1 |
| helix-turn-helix transcriptional regulator | H9N25_02950 | Q9Z9W1 | Negative | 734447 - 734815 | 13951.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

