Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | H9N25_02855 | P28809 | Positive | 707859 - 708743 | 33791.2 |
| doxx family membrane protein | H9N25_02860 | A1SDP0 | Positive | 708749 - 710169 | 51796.9 |
| l-rhamnose/proton symporter rhat | H9N25_02865 | A7FN78 | Positive | 710717 - 711811 | 39758.4 |
| bifunctional aldolase/short-chain dehydrogenase | H9N25_02870 | P40747 | Positive | 711840 - 713960 | 76578.5 |
| sugar isomerase | H9N25_02875 | Q92S14 | Positive | 714219 - 715499 | 47213.1 |
| carbohydrate kinase | H9N25_02880 | Q9KCM0 | Positive | 715515 - 716900 | 52238.2 |
| gntr family transcriptional regulator | H9N25_02885 | O34712 | Positive | 716942 - 717973 | 39175.4 |
| dead/deah box helicase family protein | H9N25_02890 | P75093 | Positive | 718220 - 721606 | 130163.0 |
| sdr family oxidoreductase | H9N25_02895 | P0AD13 | Negative | 721824 - 722642 | 29785.8 |
| nad-dependent epimerase/dehydratase family protein | H9N25_02900 | Not Available | Negative | 722690 - 723622 | 34950.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

