Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monofunctional biosynthetic peptidoglycan transglycosylase | H9N25_02755 | Q1IGD6 | Positive | 687056 - 687784 | 27907.4 |
| asma family protein | H9N25_02760 | Not Available | Negative | 687845 - 690256 | 88848.8 |
| gtp cyclohydrolase | H9N25_02765 | Not Available | Negative | 690358 - 690645 | 11147.6 |
| abc transporter atpase | H9N25_02770 | Not Available | Negative | 690650 - 691129 | 18407.8 |
| hypothetical protein | H9N25_02775 | Not Available | Positive | 691180 - 691665 | 18615.1 |
| tldd/pmba family protein | H9N25_02780 | O26944 | Positive | 691991 - 693628 | 60112.3 |
| doxx family membrane protein | H9N25_02785 | Not Available | Positive | 693637 - 694973 | 47518.3 |
| (fe-s)-binding protein | H9N25_02790 | P45866 | Negative | 695043 - 695831 | 28866.0 |
| 4fe-4s dicluster domain-containing protein | H9N25_02795 | P45866 | Negative | 695931 - 697226 | 48590.5 |
| Trna-phe | Not Available | Not Available | Positive | 697456 - 697528 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

