Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_02705 | P09122 | Negative | 678704 - 680526 | 66925.4 |
| hypothetical protein | H9N25_02710 | Not Available | Positive | 680663 - 681409 | 29111.1 |
| duf1570 domain-containing protein | H9N25_02715 | Not Available | Negative | 681415 - 682179 | 29491.0 |
| helix-turn-helix transcriptional regulator | H9N25_02720 | P96660 | Negative | 682204 - 683067 | 32957.2 |
| hypothetical protein | H9N25_02725 | Not Available | Positive | 683250 - 683843 | 22511.9 |
| 30s ribosomal protein s6 | H9N25_02730 | Q5L9B5 | Positive | 684098 - 684454 | 13431.2 |
| 30s ribosomal protein s18 | H9N25_02735 | A6LIX8 | Positive | 684454 - 684717 | 10240.7 |
| 50s ribosomal protein l9 | H9N25_02740 | Q11RW8 | Positive | 684730 - 685173 | 16045.4 |
| sdr family oxidoreductase | H9N25_02745 | P14802 | Negative | 685319 - 686017 | 24806.8 |
| duf1080 domain-containing protein | H9N25_02750 | Not Available | Negative | 686048 - 686857 | 30798.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

