Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dhcw motif cupin fold protein | H9N25_02605 | Not Available | Negative | 659679 - 660026 | 12869.1 |
| duf4199 domain-containing protein | H9N25_02610 | Not Available | Negative | 660081 - 660623 | 19928.1 |
| dna-binding response regulator | H9N25_02615 | P55184 | Negative | 660741 - 661214 | 17907.6 |
| hypothetical protein | H9N25_02620 | Not Available | Positive | 661473 - 662261 | 29005.6 |
| alpha-ketoglutarate-dependent dioxygenase alkb | H9N25_02625 | Q6P6J4 | Negative | 662379 - 662987 | 23313.8 |
| metal-binding protein | H9N25_02630 | Not Available | Negative | 662963 - 663211 | 9720.99 |
| methylated-dna--[protein]-cysteine s-methyltransferase | H9N25_02635 | P06134 | Negative | 663218 - 664057 | 31401.6 |
| mepb family protein | H9N25_02640 | Not Available | Negative | 664158 - 664685 | 19913.9 |
| n-acetylglutamate synthase | H9N25_02645 | Not Available | Negative | 664729 - 665067 | 12747.0 |
| hypothetical protein | H9N25_02650 | Not Available | Negative | 665170 - 665529 | 13821.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

