Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_02555 | Q58626 | Positive | 649659 - 651148 | 52223.1 |
| riboflavin synthase | H9N25_02560 | P50854 | Positive | 651307 - 651891 | 21254.2 |
| glycoside hydrolase family 78 protein | H9N25_02565 | T2KNB2 | Positive | 652060 - 654708 | 98912.1 |
| duf4268 domain-containing protein | H9N25_02570 | Not Available | Positive | 654889 - 655350 | 17911.1 |
| hypothetical protein | H9N25_02575 | Not Available | Negative | 655347 - 656501 | 43554.1 |
| hypothetical protein | H9N25_02580 | Not Available | Positive | 656634 - 656930 | 11088.0 |
| port family protein | H9N25_02585 | Not Available | Positive | 656943 - 657533 | 21151.5 |
| yihy/virulence factor brkb family protein | H9N25_02590 | Q65WM1 | Negative | 657685 - 658608 | 34459.8 |
| meta domain-containing protein | H9N25_02595 | P52644 | Negative | 658684 - 659082 | 14540.6 |
| doxx family membrane protein | H9N25_02600 | P05332 | Negative | 659159 - 659682 | 20063.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

