Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | H9N25_02505 | Not Available | Positive | 639435 - 640046 | 23257.4 |
| 5'(3')-deoxyribonucleotidase | H9N25_02510 | Q5HR07 | Negative | 640706 - 641257 | 21245.7 |
| deor/glpr transcriptional regulator | H9N25_02515 | P94591 | Positive | 641354 - 642103 | 27588.4 |
| hypothetical protein | H9N25_02520 | Not Available | Negative | 642198 - 642542 | 11676.0 |
| type i glyceraldehyde-3-phosphate dehydrogenase | H9N25_02525 | B7LQ20 | Negative | 643693 - 644691 | 35560.5 |
| hypothetical protein | H9N25_02530 | Not Available | Negative | 644700 - 645542 | 31627.2 |
| 6-phosphofructokinase | H9N25_02535 | Q8A624 | Negative | 645544 - 646530 | 35073.3 |
| nudix hydrolase | H9N25_02540 | Q58549 | Positive | 646641 - 647330 | 26799.7 |
| n-acetylglucosamine kinase | H9N25_02545 | Q54PM7 | Negative | 647468 - 648328 | 32093.0 |
| threonine aldolase | H9N25_02550 | O07051 | Positive | 648549 - 649574 | 36923.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

