Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_02455 | Not Available | Negative | 622427 - 622786 | 13266.1 |
| penicillin acylase family protein | H9N25_02460 | Q9I4U2 | Negative | 622793 - 625222 | 92036.9 |
| doxx family membrane protein | H9N25_02465 | Not Available | Positive | 625420 - 628343 | 105293.0 |
| glycoside hydrolase family 31 protein | H9N25_02470 | Q9F234 | Positive | 628631 - 631093 | 96218.5 |
| 1,4-alpha-glucan branching protein glgb | H9N25_02475 | O66936 | Positive | 631153 - 633117 | 75548.5 |
| hypothetical protein | H9N25_02480 | Not Available | Positive | 633331 - 633681 | 13489.4 |
| ig-like domain-containing protein | H9N25_02485 | Not Available | Positive | 634230 - 636407 | 76457.2 |
| hypothetical protein | H9N25_02490 | Not Available | Positive | 636446 - 637165 | 24461.3 |
| gliding motility-associated c-terminal domain-containing protein | H9N25_02495 | Not Available | Positive | 637190 - 638128 | 34240.7 |
| type ix secretion system membrane protein porp/sprf | H9N25_02500 | Not Available | Positive | 638151 - 639122 | 36454.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

