Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carotenoid biosynthesis protein | H9N25_24150 | A0A0A1GNF2 | Positive | 5810078 - 5810752 | 25466.2 |
| hypothetical protein | H9N25_24155 | Not Available | Positive | 5810781 - 5810990 | 7890.67 |
| txe/yoeb family addiction module toxin | H9N25_24160 | P9WF08 | Positive | 5810972 - 5811253 | 10814.1 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | H9N25_24165 | Q11YY5 | Positive | 5811270 - 5812121 | 32210.0 |
| fatty acid desaturase | H9N25_24170 | Q44261 | Positive | 5812296 - 5812967 | 26644.4 |
| ferrochelatase | H9N25_24175 | Q6MAW8 | Positive | 5813184 - 5814194 | 37885.8 |
| gluconokinase | H9N25_24180 | P46859 | Positive | 5814202 - 5814708 | 18525.4 |
| 3-deoxy-d-manno-octulosonic acid transferase | H9N25_24185 | P0AC77 | Negative | 5814686 - 5815933 | 47193.8 |
| udp-glucose/gdp-mannose dehydrogenase family protein | H9N25_24190 | O86422 | Positive | 5816136 - 5817446 | 48268.1 |
| sdr family oxidoreductase | H9N25_24195 | Q8NBZ7 | Positive | 5817448 - 5818437 | 37379.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

