Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtra family protein | H9N25_23950 | P64293 | Negative | 5772303 - 5772683 | 14722.2 |
| glycosyltransferase family 39 protein | H9N25_23955 | O67270 | Negative | 5772688 - 5774325 | 62992.3 |
| pyridoxine 5'-phosphate synthase | H9N25_23960 | A5FJ95 | Positive | 5774409 - 5775125 | 26465.6 |
| eama family transporter | H9N25_23965 | P42243 | Positive | 5775254 - 5776144 | 32016.7 |
| hypothetical protein | H9N25_23970 | Not Available | Positive | 5776345 - 5776908 | 21070.4 |
| aminomethyl-transferring glycine dehydrogenase | H9N25_23975 | Q8F937 | Positive | 5777277 - 5780153 | 104775.0 |
| duf4157 domain-containing protein | H9N25_23980 | Not Available | Negative | 5780464 - 5780781 | 11458.4 |
| hypothetical protein | H9N25_23985 | Not Available | Negative | 5780889 - 5781104 | 8113.89 |
| hypothetical protein | H9N25_23990 | Not Available | Negative | 5781418 - 5781867 | 17091.5 |
| ycei family protein | H9N25_23995 | Q12MB6 | Positive | 5782189 - 5782776 | 20284.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

