Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate synthase | H9N25_02355 | A6H0M8 | Negative | 603994 - 604881 | 31587.1 |
| nad-dependent dna ligase liga | H9N25_02360 | Q11VI1 | Negative | 604973 - 606985 | 75713.7 |
| hypothetical protein | H9N25_02365 | Not Available | Negative | 607016 - 608515 | 56131.1 |
| hypothetical protein | H9N25_02370 | Not Available | Negative | 608553 - 609227 | 26408.2 |
| tyrosine--trna ligase | H9N25_02375 | Q7MXD8 | Positive | 609400 - 610686 | 47905.4 |
| duf4870 domain-containing protein | H9N25_02380 | Not Available | Positive | 610701 - 611156 | 17513.5 |
| tonb-dependent receptor | H9N25_02385 | Not Available | Negative | 611211 - 613571 | 90352.3 |
| histidine kinase | H9N25_02390 | P0AA94 | Positive | 613942 - 614889 | 35987.1 |
| doxx family membrane protein | H9N25_02395 | Q9KU36 | Positive | 614864 - 615576 | 26629.5 |
| gtp-binding protein | H9N25_02400 | P94400 | Negative | 615943 - 617142 | 45441.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

