Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | H9N25_23900 | Not Available | Negative | 5762265 - 5763257 | 37121.1 |
| polyprenyl synthetase family protein | H9N25_23905 | P31114 | Positive | 5763550 - 5764521 | 36350.0 |
| terc family protein | H9N25_23910 | P96554 | Positive | 5764521 - 5765576 | 39973.3 |
| lyse family translocator | H9N25_23915 | Q8XDS6 | Positive | 5765751 - 5766386 | 23230.4 |
| m20/m25/m40 family metallo-hydrolase | H9N25_23920 | P25152 | Positive | 5766449 - 5767897 | 52430.9 |
| polymer-forming cytoskeletal protein | H9N25_23925 | Not Available | Positive | 5767909 - 5768109 | 7148.58 |
| cbs domain-containing protein | H9N25_23930 | Q9LEV3 | Negative | 5768160 - 5768588 | 15951.5 |
| adenosylhomocysteinase | H9N25_23935 | A5FJK3 | Positive | 5768937 - 5770253 | 48269.8 |
| hypothetical protein | H9N25_23940 | Not Available | Positive | 5770549 - 5770890 | 12193.9 |
| polysaccharide deacetylase | H9N25_23945 | Q92JQ5 | Negative | 5771014 - 5771994 | 36834.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

