Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lactonase family protein | H9N25_23850 | O34499 | Negative | 5747505 - 5748614 | 40006.6 |
| rrna pseudouridine synthase | H9N25_23855 | O67444 | Negative | 5748737 - 5750212 | 56134.9 |
| lytic transglycosylase domain-containing protein | H9N25_23860 | P0AEZ8 | Positive | 5750476 - 5751258 | 29377.0 |
| ferredoxin--nadp reductase | H9N25_23865 | P76081 | Positive | 5751674 - 5752720 | 40395.6 |
| hypothetical protein | H9N25_23870 | Q0T964 | Negative | 5752880 - 5753278 | 15526.7 |
| excinuclease abc subunit uvra | H9N25_23875 | O34863 | Positive | 5753612 - 5756527 | 108660.0 |
| tatd family hydrolase | H9N25_23880 | P37545 | Positive | 5756643 - 5757410 | 28878.7 |
| type i asparaginase | H9N25_23885 | P0A963 | Positive | 5757694 - 5758713 | 37895.7 |
| mbl fold metallo-hydrolase | H9N25_23890 | P54435 | Positive | 5759081 - 5760493 | 51282.5 |
| ypda family putative bacillithiol disulfide reductase | H9N25_23895 | P50736 | Positive | 5760599 - 5761564 | 35794.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

