Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | H9N25_23700 | Q7U1Z6 | Negative | 5720497 - 5721048 | 20997.5 |
| lipoyl synthase | H9N25_23705 | Q11Q84 | Negative | 5721163 - 5722056 | 33291.3 |
| gnat family n-acetyltransferase | H9N25_23710 | Q9R381 | Negative | 5722252 - 5722683 | 16466.8 |
| cysteine--trna ligase | H9N25_23715 | A0M500 | Positive | 5723125 - 5724585 | 54971.7 |
| aspartate/glutamate racemase family protein | H9N25_23720 | A0A0H3JGH6 | Positive | 5724610 - 5725290 | 25195.7 |
| m28 family peptidase | H9N25_23725 | Q16769 | Positive | 5725414 - 5726397 | 36289.6 |
| nuclear transport factor 2 family protein | H9N25_23730 | Not Available | Positive | 5726487 - 5727344 | 31208.1 |
| glycerophosphodiester phosphodiesterase | H9N25_23735 | O07592 | Positive | 5727581 - 5728468 | 33732.3 |
| hypothetical protein | H9N25_23740 | Not Available | Negative | 5728569 - 5728760 | 7099.39 |
| doxx family membrane protein | H9N25_23745 | Not Available | Negative | 5728949 - 5729119 | 6693.11 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

