Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase family protein | H9N25_23650 | P08157 | Negative | 5707307 - 5708671 | 49906.9 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | H9N25_23655 | Q9ZDC7 | Negative | 5708776 - 5709489 | 27336.3 |
| iron-containing alcohol dehydrogenase | H9N25_23660 | Q59104 | Negative | 5709583 - 5710731 | 41946.6 |
| glutamine synthetase | H9N25_23665 | P0C7B6 | Negative | 5711141 - 5712502 | 50862.7 |
| ethanolamine permease | H9N25_23670 | O87394 | Negative | 5712502 - 5713815 | 47208.3 |
| m48 family metalloprotease | H9N25_23675 | Q6F8Q1 | Positive | 5714026 - 5716098 | 79585.9 |
| hypothetical protein | H9N25_23680 | P0ADJ8 | Negative | 5716138 - 5716545 | 15095.6 |
| nad(p)h-hydrate dehydratase | H9N25_23685 | B5YIM0 | Positive | 5716744 - 5718213 | 53671.7 |
| aim24 family protein | H9N25_23690 | Not Available | Positive | 5718347 - 5719048 | 25472.7 |
| anti-sigma factor | H9N25_23695 | Not Available | Negative | 5719637 - 5720494 | 31334.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

