Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside-diphosphate kinase | H9N25_23600 | A5F9Z6 | Negative | 5697914 - 5698333 | 15254.9 |
| dhh family phosphoesterase | H9N25_23605 | Q5SM25 | Positive | 5698542 - 5699552 | 37434.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_23610 | P65765 | Positive | 5699597 - 5700592 | 35848.4 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_23615 | O08437 | Positive | 5700795 - 5701763 | 34866.2 |
| response regulator transcription factor | H9N25_23620 | Q1M7A0 | Positive | 5702286 - 5702921 | 23874.3 |
| sh3 domain-containing protein | H9N25_23625 | P21171 | Negative | 5702974 - 5703396 | 15034.5 |
| bon domain-containing protein | H9N25_23630 | Not Available | Negative | 5703404 - 5703847 | 15496.1 |
| cyth domain-containing protein | H9N25_23635 | A3DIJ8 | Negative | 5704156 - 5704626 | 18288.6 |
| family 20 glycosylhydrolase | H9N25_23640 | P49008 | Negative | 5704626 - 5706575 | 73529.4 |
| stas/sec14 domain-containing protein | H9N25_23645 | Not Available | Negative | 5706910 - 5707302 | 14703.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

