Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gln | Not Available | Not Available | Positive | 5690362 - 5690435 | Not Available |
| ribose-phosphate pyrophosphokinase | H9N25_23555 | Q7MT83 | Positive | 5690506 - 5691447 | 33983.2 |
| 50s ribosomal protein l25/general stress protein ctc | H9N25_23560 | B3ERN9 | Positive | 5691601 - 5692185 | 21520.4 |
| aminoacyl-trna hydrolase | H9N25_23565 | Q11RT7 | Positive | 5692397 - 5692957 | 20492.1 |
| tetratricopeptide repeat protein | H9N25_23570 | Not Available | Negative | 5693641 - 5694306 | 24277.0 |
| hypothetical protein | H9N25_23575 | Not Available | Negative | 5694430 - 5694822 | 14831.6 |
| dna replication/repair protein recf | H9N25_23580 | A6H141 | Positive | 5694943 - 5696046 | 42753.5 |
| duf721 domain-containing protein | H9N25_23585 | A4Q9S3 | Positive | 5696039 - 5696329 | 11218.0 |
| hypothetical protein | H9N25_23590 | Not Available | Negative | 5696440 - 5696616 | 6177.07 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_23595 | O08437 | Negative | 5697008 - 5697778 | 27416.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

