Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | H9N25_23505 | O05404 | Positive | 5669206 - 5669760 | 21674.0 |
| fecr family protein | H9N25_23510 | Not Available | Positive | 5670558 - 5671625 | 40381.2 |
| doxx family membrane protein | H9N25_23515 | T2KM18 | Positive | 5671745 - 5675088 | 120761.0 |
| doxx family membrane protein | H9N25_23520 | Not Available | Positive | 5675107 - 5676701 | 58690.1 |
| family 20 glycosylhydrolase | H9N25_23525 | B2UPR7 | Positive | 5676931 - 5679270 | 87540.5 |
| hypothetical protein | H9N25_23530 | Not Available | Positive | 5679699 - 5680100 | 14113.8 |
| carboxypeptidase | H9N25_23535 | Q9C7D4 | Positive | 5680258 - 5681817 | 58551.4 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | H9N25_23540 | A5FNY7 | Positive | 5682561 - 5683523 | 35811.4 |
| duf2723 domain-containing protein | H9N25_23545 | Q8MXQ3 | Negative | 5683852 - 5686893 | 114270.0 |
| duf2723 domain-containing protein | H9N25_23550 | Q9NX78 | Negative | 5687109 - 5690135 | 114483.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

