Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | H9N25_23455 | Q56194 | Positive | 5651449 - 5652462 | 37947.2 |
| susc/raga family tonb-linked outer membrane protein | H9N25_23460 | Q8A1G1 | Positive | 5652896 - 5655883 | 108103.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_23465 | Q8A1G2 | Positive | 5655899 - 5657482 | 57939.1 |
| suse domain-containing protein | H9N25_23470 | Not Available | Positive | 5657501 - 5658511 | 35440.9 |
| glycoside hydrolase family 13 protein | H9N25_23475 | Q8A1G0 | Positive | 5658585 - 5660519 | 73325.7 |
| beta-phosphoglucomutase | H9N25_23480 | O06995 | Positive | 5660602 - 5661300 | 25160.1 |
| glycoside hydrolase family 65 protein | H9N25_23485 | E6ENP7 | Positive | 5661401 - 5663719 | 88323.3 |
| alpha-amylase family protein | H9N25_23490 | P14899 | Positive | 5663716 - 5665557 | 69040.0 |
| mfs transporter | H9N25_23495 | Q9FE59 | Positive | 5665693 - 5667069 | 50864.9 |
| alpha-amylase | H9N25_23500 | Q55088 | Positive | 5667261 - 5669144 | 70563.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

