Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate--l-alanine ligase | H9N25_02305 | A6H194 | Positive | 592096 - 593451 | 49816.8 |
| cell division protein ftsq | H9N25_02310 | Q97H88 | Positive | 593444 - 594664 | 46279.3 |
| cell division protein ftsa | H9N25_02315 | P47203 | Positive | 594670 - 596028 | 49405.9 |
| cell division protein ftsz | H9N25_02320 | P0A9A8 | Positive | 596158 - 597789 | 59337.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | H9N25_02325 | B0KC20 | Positive | 597956 - 599197 | 46256.9 |
| histone h1 | H9N25_02330 | Not Available | Positive | 599460 - 599636 | 6468.81 |
| helix-turn-helix domain-containing protein | H9N25_02335 | P17410 | Positive | 599951 - 600934 | 38053.8 |
| n-acetyltransferase family protein | H9N25_02340 | P16426 | Positive | 601120 - 601602 | 18273.2 |
| serine hydrolase | H9N25_02345 | P85302 | Positive | 601835 - 603352 | 56869.3 |
| hypothetical protein | H9N25_02350 | Not Available | Negative | 603479 - 603769 | 11111.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

