Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_23405 | T2KPM5 | Positive | 5637694 - 5639217 | 57872.4 |
| hypothetical protein | H9N25_23410 | Not Available | Positive | 5639355 - 5639993 | 24606.3 |
| duf5008 domain-containing protein | H9N25_23415 | Not Available | Positive | 5640027 - 5641646 | 58957.2 |
| duf4983 domain-containing protein | H9N25_23420 | Not Available | Positive | 5641669 - 5643372 | 63017.4 |
| hypothetical protein | H9N25_23425 | A3DC75 | Positive | 5643403 - 5644845 | 51977.2 |
| pkd domain-containing protein | H9N25_23430 | Q81BJ6 | Positive | 5644858 - 5645703 | 31906.1 |
| duf4965 domain-containing protein | H9N25_23435 | Q2U4L7 | Positive | 5645914 - 5648388 | 92417.6 |
| dna polymerase iv | H9N25_23440 | Q72MY7 | Negative | 5649029 - 5650129 | 40837.1 |
| hypothetical protein | H9N25_23445 | Not Available | Positive | 5650195 - 5650548 | 13645.3 |
| response regulator transcription factor | H9N25_23450 | Q55890 | Negative | 5650795 - 5651154 | 13392.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

