Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | H9N25_23355 | Q82Z76 | Positive | 5620775 - 5621467 | 26409.1 |
| coce/nond family hydrolase | H9N25_23360 | Q9L9D7 | Positive | 5621534 - 5623240 | 64826.3 |
| helix-turn-helix transcriptional regulator | H9N25_23365 | Q65Q31 | Negative | 5623466 - 5624254 | 31008.8 |
| doxx family membrane protein | H9N25_23370 | A0A221J5X3 | Positive | 5624348 - 5625405 | 39182.7 |
| sulp family inorganic anion transporter | H9N25_23375 | P55189 | Positive | 5625543 - 5627078 | 55308.8 |
| susc/raga family tonb-linked outer membrane protein | H9N25_23380 | T2KM18 | Positive | 5627616 - 5630630 | 113302.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_23385 | T2KPM5 | Positive | 5630632 - 5632179 | 58535.6 |
| fasciclin domain-containing protein | H9N25_23390 | Q9FGY9 | Positive | 5632277 - 5633386 | 41026.9 |
| duf5007 domain-containing protein | H9N25_23395 | Not Available | Positive | 5633423 - 5634511 | 41017.7 |
| susc/raga family tonb-linked outer membrane protein | H9N25_23400 | T2KPJ3 | Positive | 5634578 - 5637682 | 114540.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

