Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_23255 | Not Available | Positive | 5597060 - 5597218 | 5884.33 |
| helix-turn-helix transcriptional regulator | H9N25_23260 | Not Available | Positive | 5597480 - 5598049 | 21901.9 |
| alkaline phosphatase | H9N25_23265 | W8E7D1 | Positive | 5598272 - 5599162 | 32310.0 |
| hypothetical protein | H9N25_23270 | Not Available | Positive | 5599320 - 5600438 | 42507.6 |
| hypothetical protein | H9N25_23275 | Not Available | Positive | 5600408 - 5600638 | 8561.76 |
| tigr03364 family fad-dependent oxidoreductase | H9N25_23280 | S5FMM4 | Positive | 5600858 - 5602018 | 43573.0 |
| doxx family membrane protein | H9N25_23285 | T2KMI3 | Positive | 5602122 - 5605348 | 117590.0 |
| doxx family membrane protein | H9N25_23290 | Not Available | Positive | 5605359 - 5606926 | 59234.6 |
| Trna-asn | Not Available | Not Available | Positive | 5607127 - 5607203 | Not Available |
| helix-turn-helix transcriptional regulator | H9N25_23300 | Q56143 | Negative | 5607340 - 5608314 | 37468.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

