Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr domain-containing protein | H9N25_23205 | Not Available | Negative | 5586784 - 5587881 | 41611.5 |
| sigma-70 family rna polymerase sigma factor | H9N25_23210 | P23484 | Negative | 5587993 - 5588532 | 20827.7 |
| winged helix-turn-helix transcriptional regulator | H9N25_23215 | O32242 | Positive | 5588857 - 5589180 | 12478.2 |
| srpbcc domain-containing protein | H9N25_23220 | Not Available | Positive | 5589186 - 5589653 | 17651.5 |
| doxx family protein | H9N25_23225 | Not Available | Positive | 5589660 - 5590040 | 14418.2 |
| hypothetical protein | H9N25_23230 | Not Available | Positive | 5590059 - 5590331 | 10333.6 |
| ydei/ompd-associated family protein | H9N25_23235 | P96666 | Positive | 5590344 - 5590928 | 22179.9 |
| duf4256 domain-containing protein | H9N25_23240 | Not Available | Positive | 5591602 - 5592168 | 21727.9 |
| gnat family n-acetyltransferase | H9N25_23245 | Q9UHF3 | Negative | 5592176 - 5592676 | 18426.2 |
| tonb-dependent receptor | H9N25_23250 | P38370 | Positive | 5593123 - 5596374 | 119314.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

