Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | H9N25_23155 | Q5JEK6 | Negative | 5575779 - 5576699 | 33817.8 |
| Trna-asn | Not Available | Not Available | Positive | 5576844 - 5576920 | Not Available |
| phzf family isomerase | H9N25_23165 | P58293 | Negative | 5577021 - 5577926 | 33302.9 |
| doxx family membrane protein | H9N25_23170 | Not Available | Positive | 5578140 - 5578326 | 6543.86 |
| tlpa family protein disulfide reductase | H9N25_23175 | Q73B22 | Negative | 5578554 - 5579927 | 52228.7 |
| hypothetical protein | H9N25_23180 | Not Available | Negative | 5579976 - 5581469 | 56381.8 |
| duf4843 domain-containing protein | H9N25_23185 | Not Available | Negative | 5581489 - 5582253 | 28407.4 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_23190 | Not Available | Negative | 5582269 - 5582928 | 25030.3 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_23195 | T2KPM5 | Negative | 5582910 - 5583689 | 29247.9 |
| susc/raga family tonb-linked outer membrane protein | H9N25_23200 | T2KMI3 | Negative | 5583702 - 5586791 | 114603.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

