Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | H9N25_23055 | P25197 | Negative | 5551906 - 5555100 | 116145.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_23060 | Q57500 | Negative | 5555165 - 5556232 | 38518.1 |
| tolc family protein | H9N25_23065 | Q54001 | Negative | 5556235 - 5557575 | 49579.4 |
| tetr/acrr family transcriptional regulator | H9N25_23070 | Q8GLC6 | Negative | 5557663 - 5558274 | 23509.7 |
| sterol desaturase family protein | H9N25_23075 | P21688 | Positive | 5558490 - 5558876 | 15426.9 |
| thioredoxin domain-containing protein | H9N25_23080 | Not Available | Positive | 5559017 - 5560603 | 59894.5 |
| hypothetical protein | H9N25_23085 | Not Available | Positive | 5560758 - 5561036 | 9644.18 |
| peptidase domain-containing abc transporter | H9N25_23090 | P59852 | Positive | 5561176 - 5563362 | 82839.4 |
| hlyd family efflux transporter periplasmic adaptor subunit | H9N25_23095 | P16534 | Positive | 5563389 - 5564672 | 49077.0 |
| hypothetical protein | H9N25_23100 | Not Available | Positive | 5564762 - 5564968 | 7011.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

