Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| esterase-like activity of phytase family protein | H9N25_23005 | Not Available | Positive | 5540122 - 5541282 | 43876.2 |
| had family phosphatase | H9N25_23010 | Q9X0Y1 | Positive | 5541307 - 5541972 | 25273.6 |
| porin family protein | H9N25_23015 | Not Available | Positive | 5542395 - 5542946 | 19428.9 |
| duf2306 domain-containing protein | H9N25_23020 | Not Available | Positive | 5543215 - 5543838 | 23686.0 |
| dihydrolipoyl dehydrogenase | H9N25_23025 | P31023 | Positive | 5544170 - 5545576 | 49869.4 |
| choice-of-anchor i family protein | H9N25_23030 | P86786 | Positive | 5545771 - 5547318 | 55101.1 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | H9N25_23035 | P56904 | Positive | 5547737 - 5548555 | 28403.0 |
| tena family protein | H9N25_23040 | Q8FTH8 | Positive | 5548552 - 5549205 | 24805.6 |
| mfs transporter | H9N25_23045 | Q7CH99 | Positive | 5549316 - 5550524 | 43675.4 |
| hypothetical protein | H9N25_23050 | Not Available | Negative | 5550895 - 5551698 | 30123.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

