Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | H9N25_22955 | Q7VG78 | Negative | 5528770 - 5529309 | 20525.5 |
| trans-2-enoyl-coa reductase family protein | H9N25_22960 | A5FE91 | Negative | 5529406 - 5530599 | 43242.5 |
| duf2490 domain-containing protein | H9N25_22965 | Not Available | Positive | 5530939 - 5531646 | 27675.2 |
| hypothetical protein | H9N25_22970 | Not Available | Positive | 5531780 - 5532622 | 31724.2 |
| nucleotidyltransferase domain-containing protein | H9N25_22975 | Not Available | Negative | 5532730 - 5533506 | 29938.4 |
| duf1572 family protein | H9N25_22980 | Not Available | Negative | 5533593 - 5534039 | 17117.7 |
| duf2807 domain-containing protein | H9N25_22985 | Not Available | Negative | 5534273 - 5535004 | 24589.1 |
| m1 family metallopeptidase | H9N25_22990 | P24527 | Negative | 5535130 - 5536785 | 62911.6 |
| coce/nond family hydrolase | H9N25_22995 | Q9L9D7 | Negative | 5536977 - 5538848 | 71283.5 |
| hypothetical protein | H9N25_23000 | Not Available | Positive | 5539089 - 5539925 | 30714.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

