Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| division/cell wall cluster transcriptional repressor mraz | H9N25_02255 | A0M535 | Positive | 580867 - 581334 | 17268.8 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | H9N25_02260 | A5FIX6 | Positive | 581324 - 582229 | 33812.7 |
| hypothetical protein | H9N25_02265 | Not Available | Positive | 582226 - 582648 | 16154.6 |
| pasta domain-containing protein | H9N25_02270 | Q03524 | Positive | 582638 - 584740 | 76854.1 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | H9N25_02275 | Q11RG9 | Positive | 584816 - 586273 | 53438.1 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | H9N25_02280 | A6H198 | Positive | 586273 - 587520 | 46570.3 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | H9N25_02285 | Q7MWM5 | Positive | 587718 - 589064 | 49300.2 |
| ftsw/roda/spove family cell cycle protein | H9N25_02290 | P07373 | Positive | 589080 - 590267 | 43271.9 |
| four helix bundle protein | H9N25_02295 | Not Available | Positive | 590381 - 590755 | 13900.8 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | H9N25_02300 | A6LEU3 | Positive | 590849 - 591961 | 39782.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

