Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_22905 | Not Available | Negative | 5519812 - 5520561 | 26949.0 |
| signal peptidase ii | H9N25_22910 | B4SD15 | Negative | 5520703 - 5521209 | 19299.2 |
| dinb family protein | H9N25_22915 | Not Available | Negative | 5521216 - 5521677 | 17846.4 |
| doxx family membrane protein | H9N25_22920 | Q8KCC4 | Negative | 5521670 - 5523294 | 60018.2 |
| ph domain-containing protein | H9N25_22925 | O29568 | Negative | 5523399 - 5524052 | 24798.8 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | H9N25_22930 | P74038 | Negative | 5524091 - 5524804 | 26466.9 |
| serine--trna ligase | H9N25_22935 | Q2S1G4 | Positive | 5524903 - 5526174 | 47647.8 |
| hypothetical protein | H9N25_22940 | Not Available | Negative | 5526428 - 5526742 | 11543.4 |
| simpl domain-containing protein | H9N25_22945 | P0ADS7 | Negative | 5526841 - 5527527 | 25244.8 |
| cold shock domain-containing protein | H9N25_22950 | Q83RI9 | Negative | 5528115 - 5528567 | 16853.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

