Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | H9N25_22855 | Q48455 | Positive | 5509385 - 5510587 | 46510.1 |
| glycine cleavage system aminomethyltransferase gcvt | H9N25_22860 | A6GXW3 | Positive | 5510787 - 5511866 | 39418.0 |
| 2-phosphosulfolactate phosphatase | H9N25_22865 | A5IIY7 | Positive | 5511955 - 5512671 | 26404.5 |
| outer membrane beta-barrel protein | H9N25_22870 | Not Available | Negative | 5512668 - 5513585 | 34275.7 |
| peptidase m12 | H9N25_22875 | P98068 | Negative | 5513659 - 5514453 | 29411.7 |
| patatin-like phospholipase family protein | H9N25_22880 | O34731 | Negative | 5514767 - 5515537 | 27719.2 |
| gliding motility lipoprotein gldb | H9N25_22885 | Not Available | Negative | 5515598 - 5516632 | 40278.1 |
| port family protein | H9N25_22890 | Not Available | Positive | 5516663 - 5517337 | 24115.8 |
| nad+ synthase | H9N25_22895 | P74292 | Positive | 5517387 - 5519027 | 61181.1 |
| osmc family protein | H9N25_22900 | P0C0L2 | Negative | 5519182 - 5519598 | 14795.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

