Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate hydratase | H9N25_22755 | Not Available | Negative | 5488134 - 5488649 | 19818.8 |
| hypothetical protein | H9N25_22760 | Not Available | Negative | 5488657 - 5489007 | 12702.0 |
| class ii fumarate hydratase | H9N25_22765 | Q9CMK1 | Negative | 5489144 - 5490541 | 49689.8 |
| ribosome small subunit-dependent gtpase a | H9N25_22770 | Q64YJ1 | Positive | 5490741 - 5491661 | 34367.3 |
| smr/muts family protein | H9N25_22775 | Q04M67 | Positive | 5491752 - 5492705 | 35929.1 |
| hypothetical protein | H9N25_22780 | Not Available | Positive | 5492875 - 5493174 | 11082.5 |
| preprotein translocase subunit seca | H9N25_22785 | A6GX63 | Positive | 5493312 - 5496788 | 130514.0 |
| pega domain-containing protein | H9N25_22790 | Not Available | Positive | 5497012 - 5497389 | 13409.4 |
| spor domain-containing protein | H9N25_22795 | Not Available | Positive | 5497655 - 5498098 | 17139.8 |
| doxx family membrane protein | H9N25_22800 | P37112 | Positive | 5498085 - 5499267 | 42978.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

