Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | H9N25_22705 | Not Available | Positive | 5480439 - 5481188 | 28621.6 |
| rhomboid family intramembrane serine protease | H9N25_22710 | F4JBM4 | Positive | 5481195 - 5482043 | 32891.9 |
| rhomboid family intramembrane serine protease | H9N25_22715 | Q9SSR0 | Positive | 5482040 - 5482714 | 25290.3 |
| doxx family membrane protein | H9N25_22720 | Q8GW72 | Negative | 5482721 - 5484171 | 53844.1 |
| hypothetical protein | H9N25_22725 | Not Available | Positive | 5484335 - 5485012 | 26120.4 |
| hypothetical protein | H9N25_22730 | Not Available | Positive | 5485071 - 5485478 | 14013.2 |
| thua domain-containing protein | H9N25_22735 | Not Available | Negative | 5485536 - 5486303 | 29095.4 |
| low molecular weight phosphotyrosine protein phosphatase | H9N25_22740 | Q55535 | Negative | 5486344 - 5486778 | 16501.9 |
| hypothetical protein | H9N25_22745 | Not Available | Negative | 5486781 - 5487203 | 15422.7 |
| s1/p1 nuclease | H9N25_22750 | Q9C9G4 | Negative | 5487326 - 5488132 | 30725.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

