Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmp synthase | H9N25_22605 | Not Available | Negative | 5458770 - 5459597 | 31482.6 |
| carboxylate-amine ligase | H9N25_22610 | Q01ZM2 | Negative | 5459605 - 5460705 | 42242.4 |
| hypothetical protein | H9N25_22615 | Not Available | Negative | 5460734 - 5461813 | 40486.3 |
| esterase family protein | H9N25_22620 | Not Available | Negative | 5462001 - 5462708 | 27350.5 |
| esterase family protein | H9N25_22625 | Not Available | Positive | 5462891 - 5463703 | 30507.8 |
| tigr02117 family protein | H9N25_22630 | Not Available | Negative | 5463808 - 5464485 | 25550.9 |
| voc family protein | H9N25_22635 | Q8CXK5 | Positive | 5464628 - 5465074 | 17342.8 |
| duf4180 domain-containing protein | H9N25_22640 | Not Available | Negative | 5465078 - 5465437 | 13314.8 |
| translational gtpase typa | H9N25_22645 | O07631 | Positive | 5465665 - 5467470 | 67219.3 |
| crp/fnr family transcriptional regulator | H9N25_22650 | Not Available | Positive | 5467726 - 5468286 | 21415.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

