Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sumf1/egtb/pvdo family nonheme iron enzyme | H9N25_22555 | Q8R0F3 | Negative | 5446383 - 5448062 | 62315.7 |
| type ix secretion system outer membrane channel protein porv | H9N25_22560 | Not Available | Positive | 5448747 - 5449934 | 42557.2 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | H9N25_22565 | Q11Q93 | Positive | 5449956 - 5450435 | 17397.1 |
| duf1440 domain-containing protein | H9N25_22570 | Not Available | Negative | 5450442 - 5450900 | 16731.3 |
| glycosyltransferase | H9N25_22575 | Q8GLC5 | Negative | 5451040 - 5454444 | 129000.0 |
| pirin family protein | H9N25_22580 | Q9I163 | Negative | 5454873 - 5455742 | 32147.2 |
| polyisoprenoid-binding protein | H9N25_22585 | Q5HKN0 | Negative | 5455813 - 5456343 | 19241.6 |
| crp/fnr family transcriptional regulator | H9N25_22590 | P45199 | Negative | 5456523 - 5457110 | 22864.8 |
| feob-associated cys-rich membrane protein | H9N25_22595 | Not Available | Negative | 5457123 - 5457281 | 5706.25 |
| hypothetical protein | H9N25_22600 | Not Available | Negative | 5457483 - 5458670 | 45659.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

