Pedobacter riviphilus SW-16

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter riviphilus SW-16 is a species of bacteria characterized by the presence of flagella, which suggests that it is motile and capable of moving through its environment. This motility can be advantageous for locating nutrients or evading unfavorable conditions. Genomically, it is notable for having a single replicon, indicating a streamlined genetic structure that can facilitate efficient replication and maintenance of its genetic material. The genomic information for Pedobacter riviphilus SW-16 is accessible via the accession number CP061171.1, providing a resource for researchers interested in its genetic makeup and potential applications. The traits of this bacterium align it with other members of the Pedobacter genus, which are often found in diverse ecological niches, including soil and aquatic environments. In terms of ecological insight, the motility conferred by flagella may enable Pedobacter riviphilus SW-16 to thrive in dynamic environments, where the ability to move towards more favorable conditions can be crucial for survival. This adaptability could allow it to play a role in nutrient cycling and the breakdown of organic matter within its habitat, thereby contributing to ecosystem health and stability. Understanding the characteristics of Pedobacter riviphilus SW-16 may help illuminate its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter riviphilus
StrainSW-16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter riviphilus SW-16, Complete Genome

Gene Summary

Adenine Count

1802189 bp

Thymine Count

1779389 bp

Guanine Count

1131489 bp

Cytosine Count

1112294 bp

Genome Length

5825361 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit aH9N25_22455A6H1R4Positive5428359 - 542873014051.7
nadh-quinone oxidoreductase subunit bH9N25_22460A6H1R3Positive5428938 - 542948019677.9
nadh-quinone oxidoreductase subunit cH9N25_22465A5G9B7Positive5429480 - 542998019342.3
nadh-quinone oxidoreductase subunit dH9N25_22470Q11VB5Positive5429984 - 543119846292.4
nad(p)h-dependent oxidoreductase subunit eH9N25_22475Q9D6J6Positive5431191 - 543170619195.2
nadh-quinone oxidoreductase subunit nuofH9N25_22480P56913Positive5431783 - 543315049637.7
(2fe-2s)-binding proteinH9N25_22485O21241Positive5433294 - 543430437877.4
nadh-quinone oxidoreductase subunit nuohH9N25_22490Q11VB9Positive5434304 - 543535938988.2
nadh-quinone oxidoreductase subunit iH9N25_22495Q11VC0Positive5435362 - 543586519171.5
nadh-quinone oxidoreductase subunit jH9N25_22500Q9ZCG3Positive5435996 - 543649918196.2

Displaying genes 4491 – 4500 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.